BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB033H11LP1|AL429823
(607 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 491 e-139
>3x_Contig1369
Length = 7461
Score = 491 bits (233), Expect = e-139
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 1 gcctagttgcacagggcaacaaatgatgtagaaatagaacagagaagtgatagaatcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 gcctagttgcacagggcaacaaatgatgtagaaatagaacagagaagtgatagaatcggt 3682
Query: 61 ggaaagaaagaataagcagaaataaaaaaaagaggtatccacacgttacttcctatgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3683 ggaaagaaagaataagcagaaataaaaaaaagaggtatccacacgttacttcctatgcat 3742
Query: 121 ctaaggcccggcacagaatcagcatagcagcaagtcatacttagtcttacctcagtctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 ctaaggcccggcacagaatcagcatagcagcaagtcatacttagtcttacctcagtctct 3802
Query: 181 aattcactctctgtgcctttcttgtttcacttaatttctcacaagacgaatgg 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 aattcactctctgtgcctttcttgtttcacttaatttctcacaagacgaatgg 3855
Score = 456 bits (216), Expect = e-128
Identities = 294/349 (84%)
Strand = Plus / Plus
Query: 256 cacwawayccattcaacccataacaratyccmctgtacacttscatttactgcscamatc 315
||| | | |||||||| ||||| || || || |||||||||| ||| |||||| || |||
Sbjct: 3878 cactatatccattcaatccatatcagattccactgtacacttgcatgtactgcgcacatc 3937
Query: 316 ccaaaaatdtawawccawatcwatktatctwawawamacacatgcagcacgtcatcttkw 375
|| ||||| || | ||| ||| || ||||| | | | |||||||||||||||||||||
Sbjct: 3938 cctaaaatgtatatccatatctatgtatcttatatacacacatgcagcacgtcatcttgt 3997
Query: 376 awattccscagcwattktccagtyccaycccgamawacycttaacscctmaaacgtatgt 435
| ||||| |||| ||| |||||| ||| ||||| | || |||||| ||| ||||||||||
Sbjct: 3998 atattccgcagctattgtccagttccatcccgacatactcttaacgcctcaaacgtatgt 4057
Query: 436 ttwaaacttgcctwaaagtgtgcttwaaacccatttttwaagccccagtgccagtaaaaa 495
| |||||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||||
Sbjct: 4058 cttaaacttgccttaaagtgtgctttaaacccatgttttaagccccagtgccagtcaaaa 4117
Query: 496 ttcacamaaaaagmatgattamaaaarcraaaaattwacamaaaaaaaaaattttttttt 555
|||||| | |||| ||||||| |||| | || |||| ||| |||||||||||||||||||
Sbjct: 4118 ttcacacagaaagcatgattacaaaagcgaataatttacacaaaaaaaaaattttttttt 4177
Query: 556 gtgtnacgctgtaaaacataaacaaaataactttggtaaagggaaacgg 604
|||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 4178 gtgttacgctgtaaaacataaacaaaataactttagtaaacggaaacgg 4226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.46 0.724 1.38
Gapped
Lambda K H
1.46 0.724 1.38
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4549
Number of Sequences: 1807
Number of extensions: 4549
Number of successful extensions: 161
Number of sequences better than 1.0e-20: 1
length of query: 607
length of database: 10,358,551
effective HSP length: 15
effective length of query: 592
effective length of database: 10,331,446
effective search space: 6116216032
effective search space used: 6116216032
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.5 bits)
S1: 11 (23.7 bits)
S2: 47 (99.6 bits)